publications

Selected publications. # denotes co-first author and * denotes (co-)corresponding author. An up-to-date list of all publications is available on Google Scholar.

2022

2022

  1. Nat Biotechnol
    Variant to function mapping at single-cell resolution through network propagation
    Yu, F., Cato L., D., Weng, C., Liggett L., A., Jeon, S., Xu, K., Chiang, C., Wiemels J., L., Weissman J., S., , Smith A. J., and Sankaran V., G.*
    Nature Biotechnology 2022
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2021

2021

  1. Bioinformatics
    A pipeline for single-cell and bulk-level CUT&RUN and CUT&Tag data analysis.
    Yu, F., Sankaran V., G., and Yuan G., C.*
    Bioinformatics 2021
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  2. bioRxiv
    A genetic disorder reveals a hematopoietic stem cell regulatory network co-opted in leukemia
    Voit, R.#, Tao, L.#, Yu, F.#, Cato, L., Cohen, B., Liao, X., Claudia, F., Nandakumar, S., Wahlster, L., Kristian, T., Regev, A.*, and Sankaran, V.*
    bioRxiv 2021
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2020

2020

  1. Bioinformatics
    scTPA: a web tool for single-cell transcriptome analysis of pathway activation signatures
    Zhang, Y#., Zhang, Y#., Hu, J.#, Zhang, J., Guo, F., Zhou, M., Zhang, G.*, Yu, F.*, and Su, J.*
    Bioinformatics 2020
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  2. Nucleic Acids Res
    CFEA: a cell-free epigenome atlas in human diseases
    Yu, F.#, Li, K.#, Li, S.#, Liu, J., Zhang, Y., Zhou, M., Zhao, H., Chen, H., Wu, N., Liu, Z.*, and Su, J.*
    Nucleic acids research 2020
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2019

2019

  1. Brief Bioinform
    Breast cancer prognosis signature: linking risk stratification to disease subtypes
    Yu, F.#, Quan, F.#, Xu, J.#, Zhang, Y.#, Xie, Y., Zhang, J., Lan, Y., Yuan, H., Zhang, H., Cheng, S.*, Xiao, Y.*, and Li, X.*
    Briefings in bioinformatics 2019
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  2. Front Bio
    Systematic Characterization of Circular RNA-Associated CeRNA Network Identified Novel circRNA Biomarkers in Alzheimer’s Disease
    Zhang, Y.#, Yu, F.#, Bao, S., and & Sun, J.*
    Frontiers in bioengineering and biotechnology 2019
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2018

2018

  1. Database
    LnChrom: a resource of experimentally validated lncRNA-chromatin interactions in human and mouse
    Yu, F.#, Zhang, G.#, Shi, A.#, Hu, J., Li, F., Zhang, X., Zhang, Y., Huang, J., Xiao, Y.*, Li, X.*, and & Cheng, S.*
    Database : the journal of biological databases and curation 2018
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2015

2015

  1. Sci Rep
    MeSiC: A Model-Based Method for Estimating 5 mC Levels at Single-CpG Resolution from MeDIP-seq
    Xiao, Y.#, Yu, F.#, Pang, L.#, Zhao, H., Liu, L., Zhang, G., Liu, T., Zhang, H., Fan, H., Zhang, Y., Pang, B., and & Li, X.*
    Scientific reports 2015
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